Description

write your description here

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

input{:bash}

:file

Kaiju input file

db{:bash}

:file

Kaiju database

taxon_rank{:bash}

:string

Taxonomic rank to display in report pattern: “phylum|class|order|family|genus|species”

Output

name:type
description
pattern

summary{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt{:bash}

:file

Kaiju output file

*.txt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml