Description

write your description here

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

results (file)

File containing the kaiju classification results

*.{txt}

taxon_rank (string)

Taxonomic rank to display in report
pattern: “phylum|class|order|family|genus|species”

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

results (file)

Summary table for a given taxonomic rank

*.{tsv}