Description

Merge two tab-separated output files of Kaiju and Kraken in the column format

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

kaiju{:bash}

:file

Results with taxonomic classification of each read from Kaiju

kraken{:bash}

:file

Results with taxonomic classification of each read from Kraken

*.{tsv}

db{:bash}

:directory

List containing the database and nodes files for Kaiju e.g. [ ‘database.fmi’, ‘nodes.dmp’ ]

Output

name:type
description
pattern

merged{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tsv{:bash}

:file

Results with merged taxonomic classification of each read based on the given strategy ‘1’, ‘2’, ‘lca’ [default] or ‘lowest’

*.tsv

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maintainer
Github user Joon-Klaps
get in touch
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