Description

Merge two tab-separated output files of Kaiju and Kraken in the column format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

kaiju (file)

Results with taxonomic classification of each read from Kaiju

kraken (file)

Results with taxonomic classification of each read from Kraken

*.{tsv}

db (directory)

List containing the database and nodes files for Kaiju
e.g. [ ‘database.fmi’, ‘nodes.dmp’ ]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

merged (file)

Results with merged taxonomic classification of each read based on the given strategy ‘1’, ‘2’, ‘lca’ [default] or ‘lowest’

*.tsv

versions (file)

File containing software versions

versions.yml
maintainer
Github user Joon-Klaps
get in touch
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