Merge two tab-separated output files of Kaiju and Kraken in the column format
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
kaiju
:file
Results with taxonomic classification of each read from Kaiju
kraken
Results with taxonomic classification of each read from Kraken
*.{tsv}
db
:directory
List containing the database and nodes files for Kaiju e.g. [ ‘database.fmi’, ‘nodes.dmp’ ]
merged
*.tsv
Results with merged taxonomic classification of each read based on the given strategy ‘1’, ‘2’, ‘lca’ [default] or ‘lowest’
versions_kaiju
${task.process}
:string
The name of the process
The name of the tool
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
:eval
The expression to obtain the version of the tool
versions
Fast and sensitive taxonomic classification for metagenomics
