Make Kaiju FMI-index file from a protein FASTA file
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta
:file
Uncompressed Protein FASTA file (mandatory)
*.{fa,faa,fasta}
nodes_dmp
NCBI nodes.dmp file (mandatory)
nodes.dmp
names_dmp
NCBI names.dmp file (mandatory)
names.dmp
keep_intermediate
:boolean
Keep intermediate files
true|false
fmi
*.{fmi,dmp}
Kaiju FM-index file, and input {names,nodes}.dmp NCBI taxonomy files required for downstream Kaiju commands
bwt
*.bwt
Kaiju intermedite bwt-index file (not needed for classification)
*.{bwt}
sa
*.sa
*.{sa}
versions_kaiju
${task.process}
:string
The name of the process
kaiju
The name of the tool
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
:eval
The expression to obtain the version of the tool
versions
Fast and sensitive taxonomic classification for metagenomics
