Groovy Map containing sample information
e.g. [ id:‘test’]
fasta:file
Input sequences in FASTA format. May be gzipped or uncompressed.
*.{fa,fasta}{.gz,}
compress:boolean
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.
Output
name:type
description
pattern
alignment
meta:map
Groovy Map containing sample information
e.g. [ id:'test']
*.aln{.gz,}:file
Alignment file. May be gzipped or uncompressed, depending on if compress is set to true or false.
*.{aln}{.gz,}
versions
versions.yml:file
File containing software versions
versions.yml
Tools
kalign
GPL v3
Kalign is a fast and accurate multiple sequence alignment algorithm.
