Groovy Map containing sample information
e.g. [ id:'test']
fasta (file)
Input sequences in FASTA format. May be gzipped or uncompressed.
*.{fa,fasta}{.gz,}
compress (boolean)
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded.
Output
Name (Type)
Description
Pattern
meta (map)
Groovy Map containing sample information
e.g. [ id:'test']
alignment (file)
Alignment file. May be gzipped or uncompressed, depending on if compress is set to true or false.
