Description

Create kallisto index

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’ ]

fasta (file)

genome fasta file

*.{fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:‘test’ ]

index (directory)

Kallisto genome index

*.idx

versions (file)

File containing software versions

versions.yml

Tools

kallisto
BSD-2-Clause

Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.