Description

Create kallisto index

Input

name:type
description
pattern

meta:map

Groovy Map containing reference information e.g. [ id:‘test’ ]

fasta:file

genome fasta file

*.{fasta}

Output

name:type
description
pattern

index

meta:map

Groovy Map containing reference information e.g. [ id:‘test’ ]

kallisto:directory

Kallisto genome index

*.idx

versions

versions.yml:file

File containing software versions

versions.yml

Tools

kallisto
BSD-2-Clause

Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.