index creation for kb count quantification of single-cell data.
fasta{:bash}
:file
Genomic DNA fasta file
*.{fasta,fasta.gz}
gtf{:bash}
Genomic gtf file
*.{gtf,gtf.gz}
workflow_mode{:bash}
:string
String value defining workflow to use, can be one of “standard”, “nac”, “lamanno” (obsolete)
{standard,lamanno,nac}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
index{:bash}
kb_ref_out.idx{:bash}
kb ref index file
*kb_ref_out.idx
t2g{:bash}
t2g.txt{:bash}
Transcript to gene table
*t2g.{txt}
cdna{:bash}
cdna.fa{:bash}
cDNA fasta file
*cdna.{fa}
intron{:bash}
intron.fa{:bash}
Intron fasta file
*intron.{fa}
cdna_t2c{:bash}
cdna_t2c.txt{:bash}
cDNA transcript to capture file
*cdna_t2c.{txt}
intron_t2c{:bash}
intron_t2c.txt{:bash}
Intron transcript to capture file
*intron_t2c.{txt}
kallisto|bustools (kb) is a tool developed for fast and efficient processing of single-cell OMICS data.
