index creation for kb count quantification of single-cell data.
fasta:file
Genomic DNA fasta file
*.{fasta,fasta.gz}
gtf:file
Genomic gtf file
*.{gtf,gtf.gz}
workflow_mode:string
String value defining workflow to use, can be one of “standard”, “nac”, “lamanno” (obsolete)
{standard,lamanno,nac}
versions
versions.yml:file
File containing software versions
versions.yml
index
kb_ref_out.idx:file
kb ref index file
*kb_ref_out.idx
t2g
t2g.txt:file
Transcript to gene table
*t2g.{txt}
cdna
cdna.fa:file
cDNA fasta file
*cdna.{fa}
intron
intron.fa:file
Intron fasta file
*intron.{fa}
cdna_t2c
cdna_t2c.txt:file
cDNA transcript to capture file
*cdna_t2c.{txt}
intron_t2c
intron_t2c.txt:file
Intron transcript to capture file
*intron_t2c.{txt}
kallisto|bustools (kb) is a tool developed for fast and efficient processing of single-cell OMICS data.
