Creates a histogram of the number of distinct k-mers having a given frequency.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
hist
*.hist
KAT histogram of k-mer counts
json
*.hist.dist_analysis.json
KAT histogram summary of distance analysis
png
*.png
KAT plot of k-mer histogram in PNG format
ps
*.ps
KAT plot of k-mer histogram in PS format
pdf
*.pdf
KAT plot of k-mer histogram in PDF format
jellyfish_hash
*-hash.jf*
Jellyfish hash file
*-hist.jf*
versions_kat
${task.process}
:string
The name of the process
kat
The name of the tool
kat hist --version | sed 's/kat //'
:eval
The expression to obtain the version of the tool
versions
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts
