Creates a histogram of the number of distinct k-mers having a given frequency.
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
versions
File containing software versions
versions.yml
hist
KAT histogram of k-mer counts
*.hist
json
KAT histogram summary of distance analysis
*.hist.dist_analysis.json
png
KAT plot of k-mer histogram in PNG format
*.png
ps
KAT plot of k-mer histogram in PS format
*.ps
pdf
KAT plot of k-mer histogram in PDF format
*.pdf
jellyfish_hash
Jellyfish hash file
*-hist.jf*
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts