Creates a histogram of the number of distinct k-mers having a given frequency.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
hist{:bash}
*.hist{:bash}
KAT histogram of k-mer counts
*.hist
json{:bash}
*.hist.dist_analysis.json{:bash}
KAT histogram summary of distance analysis
*.hist.dist_analysis.json
png{:bash}
*.png{:bash}
KAT plot of k-mer histogram in PNG format
*.png
ps{:bash}
*.ps{:bash}
KAT plot of k-mer histogram in PS format
*.ps
pdf{:bash}
*.pdf{:bash}
KAT plot of k-mer histogram in PDF format
*.pdf
jellyfish_hash{:bash}
*-hash.jf*{:bash}
Jellyfish hash file
*-hist.jf*
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts
