Creates a histogram of the number of distinct k-mers having a given frequency.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
hist
*.hist:file
KAT histogram of k-mer counts
*.hist
json
*.hist.dist_analysis.json:file
KAT histogram summary of distance analysis
*.hist.dist_analysis.json
png
*.png:file
KAT plot of k-mer histogram in PNG format
*.png
ps
*.ps:file
KAT plot of k-mer histogram in PS format
*.ps
pdf
*.pdf:file
KAT plot of k-mer histogram in PDF format
*.pdf
jellyfish_hash
*-hash.jf*:file
Jellyfish hash file
*-hist.jf*
versions
versions.yml:file
File containing software versions
versions.yml
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts
