Description

Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible.

Input

name:type
description
pattern

pe_reads:file

Paired-end interleaved fastq files

*.{fq,fastq}.gz

se_reads:file

Single-end fastq files

*.{fq,fastq}.gz

name:string

filename for output file(s); “.fastq.gz” will be appended

Output

name:type
description
pattern

reads

${name}.fastq.gz:file

Interleaved fastq files

*.{fq,fastq}.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

maintainer
Github user erikrikarddaniel
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