Description

Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible.

Input

Name (Type)
Description
Pattern

pe_reads (files)

Paired-end interleaved fastq files

*.{fq,fastq}.gz

se_reads (files)

Single-end fastq files

*.{fq,fastq}.gz

name (string)

filename for output file(s); “.fastq.gz” will be appended

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

reads (file)

Interleaved fastq files

*.{fq,fastq}.gz
maintainer
Github user erikrikarddaniel
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