Description

Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq_paired{:bash}

:file

Paired-end interleaved fastq files

*.{fq,fastq}.gz

fastq_unpaired{:bash}

:file

Single-end fastq files

*.{fq,fastq}.gz

Output

name:type
description
pattern

reads{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fastq.gz{:bash}

:file

Interleaved fastq files

*.{fq,fastq}.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maintainer
Github user erikrikarddaniel
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