In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
fasta{:bash}
:file
fasta file
*.{fa,fasta}
kmer_size{:bash}
:integer
k-mer size to use
report{:bash}
*.report.txt{:bash}
Text file containing unique-kmers.py execution report
*.report.txt
kmers{:bash}
*.kmers.txt{:bash}
Text file containing number of kmers
*.kmers.txt
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
khmer k-mer counting library
