Description

Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC).

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastas (files)

Klebsiella genome assemblies to be screened

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Result file generated after screening

*.txt
authors
Github user abhi18av Github user rpetit3
get in touch
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Tools

kleborate
GPL v3 or later (GPL v3+)

Screening Klebsiella genome assemblies for MLST, sub-species, and other Klebsiella related genes of interest

github.com/katholt/Kleborate github.com/katholt/Kleborate/wiki https://github.com/katholt/Kleborate 10.1038/s41467-021-24448-3