Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
sequences
:file
List of fasta files, or a directory containing FASTA files
**/*.{fa,fa.gz,fasta,fasta.gz,fna,fna.gz}
Output
name:type
description
pattern
outdir
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}
:directory
Output directory containing all .unik files and a summary file in .txt format. Every .unik file contains the sequence/reference ID,chunk index, number of chunks, and genome size of reference.
*/
info
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/_info.txt
:file
Summary file that is generated for later use
*_info.txt
versions_kmcp
${task.process}
:string
The name of the process
kmcp
:string
The name of the tool
kmcp version 2>&1 | sed 's/^.*kmcp v//'
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
kmcp
:string
The name of the tool
kmcp version 2>&1 | sed 's/^.*kmcp v//'
:eval
The expression to obtain the version of the tool
Tools
kmcp
MIT
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
