Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
sequences:file
fasta file, or a directory containing FASTA files
**/*.{fa,fa.gz,fasta,fasta.gz,fna,fna.gz}
Output
name:type
description
pattern
outdir
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}:directory
Output directory containing all .unik files and a summary file in .txt format. Every .unik file contains the sequence/reference ID,chunk index, number of chunks, and genome size of reference.
*/
info
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/_info.txt:file
Summary file that is generated for later use
*_info.txt
versions
versions.yml:file
File containing software versions
versions.yml
Tools
kmcp
MIT
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
