Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
sequences{:bash}
:file
fasta file, or a directory containing FASTA files
**/*.{fa,fa.gz,fasta,fasta.gz,fna,fna.gz}
Output
name:type
description
pattern
outdir{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}{:bash}
:directory
Output directory containing all .unik files and a summary file in .txt format. Every .unik file contains the sequence/reference ID,chunk index, number of chunks, and genome size of reference.
*/
info{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}/_info.txt{:bash}
:file
Summary file that is generated for later use
*_info.txt
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
kmcp
MIT
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
