Construct KMCP database from k-mer files
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
compute_dir
:directory
Output directory generated by “kmcp compute”
*/
meta2
taxdmp
List or directory containing NCBI-like taxdmp files (nodes.dmp, names.dmp, and optionally, merged.dmp, delnodes.dmp)
meta3
seq2taxidmap
:file
Kraken2 style sequence to taxid mapping file, with two columns: sequence ID and taxid (e.g. “accession1\t12345”)
*.map
kmcp
${prefix}
Output directory containing the database from k-mer files.
log
*.log
A log of kmcp/index output
versions_kmcp
${task.process}
:string
The name of the process
The name of the tool
kmcp version 2>&1 | sed 's/^.*kmcp v//'
:eval
The expression to obtain the version of the tool
versions
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
