Description

Construct KMCP database from k-mer files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

outdir (directory)

Output directory generated by "kmcp compute"

*/

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

kmcp (directory)

Output directory containing the database from k-mer files.

*/

log (file)

A log of kmcp/index output

*.log
author
Github user sofstam
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

kmcp
MIT

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping

github.com/shenwei356/kmcp github.com/shenwei356/kmcp#documents https://github.com/shenwei356/kmcp10.1093/bioinformatics/btac845