Description

Construct KMCP database from k-mer files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

compute_dir:directory

Output directory generated by “kmcp compute”

*/

Output

name:type
description
pattern

kmcp

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}:directory

Output directory containing the database from k-mer files.

*/

log

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.log:file

A log of kmcp/index output

*.log

versions

versions.yml:file

File containing software versions

versions.yml

Tools

kmcp
MIT

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping