Description

Merge search results from multiple databases.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

search_out{:bash}

:file

The output file created by kmcp search

*.gz

Output

name:type
description
pattern

result{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.gz{:bash}

:file

Output file in gzipped format

*.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

kmcp

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping