Description

Merge search results from multiple databases.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

search_out

:file

The output file created by kmcp search

*.gz

Output

name:type
description
pattern

result

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.gz

:file

Output file in gzipped format

*.gz

versions_kmcp

${task.process}

:string

The name of the process

kmcp

:string

The name of the tool

kmcp version 2>&1 | sed 's/^.*kmcp v//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

kmcp

:string

The name of the tool

kmcp version 2>&1 | sed 's/^.*kmcp v//'

:eval

The expression to obtain the version of the tool

Tools

kmcp

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping