Generate taxonomic profile from search results
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
search_results
:file
Gzipped file output from kmcp search module
*.gz
db
:directory
Database directory containing taxdump files and taxid file
level
:string
Taxonomic rank to generate profile at (e.g. “species”, “strain”, “assembly”)
profile
*.profile
Tab-delimited format file with 17 columns.
versions_kmcp
${task.process}
The name of the process
kmcp
The name of the tool
kmcp version 2>&1 | sed 's/^.*kmcp v//'
:eval
The expression to obtain the version of the tool
versions
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
