Description

Generate taxonomic profile from search results

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

search_results:file

Gzipped file output from kmcp search module

*.gz

db:directory

Database directory containing taxdump files and taxid file

Output

name:type
description
pattern

profile

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.profile:file

Tab-delimited format file with 17 columns.

*.profile

versions

versions.yml:file

File containing software versions

versions.yml

Tools

kmcp
MIT

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping