Description

Generate taxonomic profile from search results

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

search_results (file)

Gzipped file output from kmcp search module

*.gz

db (directory)

Database directory containing taxdump files and taxid file

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

profile (file)

Tab-delimited format file with 17 columns.

*.profile

Tools

kmcp
MIT

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping