Generate taxonomic profile from search results
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
db
Database directory containing taxdump files and taxid file
search_results
Gzipped file output from kmcp search module
*.gz
mode
Profiling mode. 0-pathogen detection 1-higher recall 2-high recall 3-default 4-high precision 5-higher precision
versions
File containing software versions
versions.yml
profile
Tab-delimited format file with 17 columns.
*.profile
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
