Search sequences against database
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
gzipped fasta or fastq files
*.{fq.gz,fastq.gz,fa.gz}
db:directory
Database directory created by “kmcp index”
*
result
*.gz:file
Output file in tab-delimited format with 15 columns
*.gz
versions
versions.yml:file
File containing software versions
versions.yml
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
