Search sequences against database
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
gzipped fasta or fastq files
*.{fq.gz,fastq.gz,fa.gz}
db
:directory
Database directory created by “kmcp index”
*
result
*.gz
Output file in tab-delimited format with 15 columns
versions_kmcp
${task.process}
:string
The name of the process
kmcp
The name of the tool
kmcp version 2>&1 | sed 's/^.*kmcp v//'
:eval
The expression to obtain the version of the tool
versions
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
