Search sequences against database
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
gzipped fasta or fastq files
*.{fq.gz,fastq.gz,fa.gz}
db{:bash}
:directory
Database directory created by “kmcp index”
*
result{:bash}
*.gz{:bash}
Output file in tab-delimited format with 15 columns
*.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
