Description

Search sequences against database

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

gzipped fasta or fastq files

*.{fq.gz,fastq.gz,fa.gz}

db:directory

Database directory created by “kmcp index”

*

Output

name:type
description
pattern

result

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.gz:file

Output file in tab-delimited format with 15 columns

*.gz

versions

versions.yml:file

File containing software versions

versions.yml

Tools

kmcp
MIT

Accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping