Produces annotation using kofamscan against a Profile database and a KO list
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Input fasta file containing query sequences
*.{fa,fasta}
profiles
:directory
Directory containing the Profiles database
*
ko_list
File containing list of KO entries with their data
txt
*.txt
Application-specific text file with hits information
*.{txt}
tsv
*.tsv
Tab separated file containing with detailed hits
*.{tsv}
versions_kofamscan
${task.process}
:string
The name of the process
kofamscan
kofamscan version string
exec_annotation --version 2>&1 | sed 's/exec_annotation //;'
:eval
The expression to obtain the version of the tool
versions
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
