Produces annotation using kofamscan against a Profile database and a KO list
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta:file
Input fasta file containing query sequences
*.{fa,fasta}
profiles:directory
Directory containing the Profiles database
*
ko_list:file
File containing list of KO entries with their data
txt
meta:file
Application-specific text file with hits information
*.{txt}
*.txt:file
tsv
Tab separated file containing with detailed hits
*.{tsv}
*.tsv:file
versions
versions.yml:file
File containing software versions
versions.yml
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
