Description

Produces annotation using kofamscan against a Profile database and a KO list

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input fasta file containing query sequences

*.{fa,fasta}

profiles (directory)

Directory containing the Profiles database

*

ko_list (file)

File containing list of KO entries with their data

*.{fa,fasta}

Output

Name (Type)
Description
Pattern

txt (file)

Application-specific text file with hits information

*.{txt}

tsv (file)

Tab separated file containing with detailed hits

*.{tsv}

versions (file)

File containing software versions

versions.yml

Tools

kofamscan
MIT License

KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam