Produces annotation using kofamscan against a Profile database and a KO list
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Input fasta file containing query sequences
*.{fa,fasta}
profiles
:directory
Directory containing the Profiles database
*
ko_list
File containing list of KO entries with their data
txt
Application-specific text file with hits information
*.{txt}
*.txt
tsv
*.tsv
Tab separated file containing with detailed hits
*.{tsv}
versions
versions.yml
File containing software versions
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
