Produces annotation using kofamscan against a Profile database and a KO list
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Input fasta file containing query sequences
*.{fa,fasta}
profiles{:bash}
:directory
Directory containing the Profiles database
*
ko_list{:bash}
File containing list of KO entries with their data
txt{:bash}
Application-specific text file with hits information
*.{txt}
*.txt{:bash}
tsv{:bash}
*.tsv{:bash}
Tab separated file containing with detailed hits
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
