Adds fasta files to a Kraken2 taxonomic database
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
fasta:file
fasta file that will be added to the database
*.{fa,fasta,fna,ffn}
taxonomy_names:file
used for associating sequences with taxonomy IDs
*.dmp
taxonomy_nodes:file
tree nodes using NCBI taxonomy nomenclature
accession2taxid:file
associates sequence accession IDs to taxonomy IDs
*.accession2taxid
db
$prefix:directory
contains required files to build the database
*/
versions
versions.yml:file
File containing software versions
versions.yml
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
