Description

Builds Kraken2 database

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

db:directory

contains required files to build the database

*/

cleaning:boolean

activate or deactivate (true or false) cleaning of intermediate files

Output

name:type
description
pattern

db

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

$prefix:directory

contains the database that can be used to perform taxonomic classification

*/

versions

versions.yml:file

File containing software versions

versions.yml

Tools

kraken2
MIT

Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

args_id: $args