Description

Builds Kraken2 database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

db (directory)

contains required files to build the database

*/

cleaning (boolean)

activate or deactivate (true or false) cleaning of intermediate files

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

db (directory)

contains the database that can be used to perform taxonomic classification

*/

versions (file)

File containing software versions

versions.yml

Tools

kraken2
MIT

Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.

args_id: $args