modules/krakentools_combinekreports

Takes multiple kraken-style reports and combines them into a single report file

krakenkrakentoolsmetagenomicstablecombiningmerging

https://github.com/nf-core/modules/[...]/modules/nf-core/krakentools/combinekreports

Description

Takes multiple kraken-style reports and combines them into a single report file

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`kreports{:bash}`
`:file`

List of kraken-style report files

*.{txt,kreport}

Output

name:type

description

pattern

`txt{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.txt{:bash}`
`:file`

Combined kreport file of all input files

*.txt

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

krakentools
GPL v3

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

github.com/jenniferlu717/KrakenTools

modules/krakentools_combinekreports

Description

Input

`meta{:bash}`
`:map`

`kreports{:bash}`
`:file`

Output

`txt{:bash}`

`meta{:bash}`
`:map`

`*.txt{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

krakentools
GPL v3

included in

maintainer

get in touch

modules/krakentools_combinekreports

Description

Input

meta{:bash}:map

kreports{:bash}:file

Output

txt{:bash}

meta{:bash}:map

*.txt{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

krakentools GPL v3

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`kreports{:bash}`
`:file`

`txt{:bash}`

`meta{:bash}`
`:map`

`*.txt{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

krakentools
GPL v3