Description

Takes multiple kraken-style reports and combines them into a single report file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

kreports:file

List of kraken-style report files

*.{txt,kreport}

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt:file

Combined kreport file of all input files

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

krakentools
GPL v3

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

github.com/jenniferlu717/KrakenTools
included in
taxprofiler
maintainer
Github user jfy133
get in touch
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