Description

Takes multiple kraken-style reports and combines them into a single report file

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

kreports

:file

List of kraken-style report files

*.{txt,kreport}

Output

name:type
description
pattern

txt

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt

:file

Combined kreport file of all input files

*.txt

versions_krakentools

${task.process}

:string

The name of the process

krakentools

:string

The name of the tool

1.2.1

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

krakentools

:string

The name of the tool

1.2.1

:string

The expression to obtain the version of the tool

Tools

krakentools
GPL v3

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

github.com/jenniferlu717/KrakenTools
included in
taxprofiler
maintainer
Github user jfy133
get in touch
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