modules/krakentools_combinekreports

Takes multiple kraken-style reports and combines them into a single report file

krakenkrakentoolsmetagenomicstablecombiningmerging

https://github.com/nf-core/modules/[...]/modules/nf-core/krakentools/combinekreports

Description

Takes multiple kraken-style reports and combines them into a single report file

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`kreports:file`

List of kraken-style report files

*.{txt,kreport}

Output

name:type

description

pattern

`txt`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.txt:file`

Combined kreport file of all input files

*.txt

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

krakentools
GPL v3

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

github.com/jenniferlu717/KrakenTools

modules/krakentools_combinekreports

Description

Input

meta:map

kreports:file

Output

txt

meta:map

*.txt:file

versions

versions.yml:file

Tools

krakentools GPL v3

`meta:map`

`kreports:file`

`txt`

`meta:map`

`*.txt:file`

`versions`

`versions.yml:file`

krakentools
GPL v3