Description

Takes multiple kraken-style reports and combines them into a single report file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

kreports (file)

List of kraken-style report files

*.{txt,kreport}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Combined kreport file of all input files

*.txt
included in
taxprofiler
maintainer
Github user jfy133
get in touch
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Tools

krakentools
GPL v3

KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.

github.com/jenniferlu717/KrakenTools