Download and build (custom) KrakenUniq databases
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
custom_library_dir
:file
List of custom fasta files for adding to database build
*
custom_taxonomy_dir
List of NCBI style taxdmp files (at a minimum: nodes.dmp, names.dmp)
custom_seqid2taxid
Custom seqid2taxid file of mapping sequence accessions to taxid
keep_intermediate
:boolean
Keep intermediate files that are not used by the database itself
true|false
db
${prefix}/
:directory
Directory containing KrakenUniq database
*/
versions_krakenuniq
${task.process}
:string
The name of the process
krakenuniq
The name of the tool
krakenuniq --version | sed '1!d;s/KrakenUniq version //'
:eval
The expression to obtain the version of the tool
versions
Metagenomics classifier with unique k-mer counting for more specific results
