Description

Download and build (custom) KrakenUniq databases

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

custom_library_dir (directory)

Optional directory containing custom fasta files for database build

*

custom_taxonomy_dir (directory)

Optional directory containing custom taxonomy files for database build

*

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

db (directory)

Directory containing KrakenUniq database

*/
author
Github user jfy133
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Tools

krakenuniq
MIT

Metagenomics classifier with unique k-mer counting for more specific results

github.com/fbreitwieser/krakenuniq 10.1186/s13059-018-1568-0