Description

Download and build (custom) KrakenUniq databases

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

custom_library_dir:directory

Optional directory containing custom fasta files for database build

*

custom_taxonomy_dir:directory

Optional directory containing custom taxonomy files for database build

*

custom_seqid2taxid:file

custom seqid2taxid

Output

name:type
description
pattern

db

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

$prefix/:directory

Directory containing KrakenUniq database

*/

versions

versions.yml:file

File containing software versions

versions.yml

Tools

krakenuniq
MIT

Metagenomics classifier with unique k-mer counting for more specific results