Description

Download KrakenUniq databases and related fles

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pattern (string)

Pattern indicating what type of NCBI data to download. See KrakenUniq documnation for possibilities.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

output (directory)

Directory containing downloaded data with directory naming being the user provided pattern.

Tools

krakenuniq
MIT

Metagenomics classifier with unique k-mer counting for more specific results