modules/krakenuniq_preloadedkrakenuniq
Classifies metagenomic sequence data using unique k-mer counts
Input
List of input files containing sequences. All of them must be either in FASTA or FASTQ format.
Format of all given sequencing files as literal string, either ‘fasta’ or ‘fastq’.
{fasta,fastq} Amount of maximum amount of RAM each chunk of database that should be loaded at any one time
*GB Optionally, commands are added to save classified and unclassified reads
as FASTQ or FASTA files depending on the input format. When the input
is paired-end, the single output FASTQ contains merged reads.
Output
Reads classified as belonging to any of the taxa
in the KrakenUniq reference database.
*.classified.{fastq,fasta}.gz Reads not classified to any of the taxa
in the KrakenUniq reference database.
*.unclassified.{fastq,fasta}.gz KrakenUniq output file indicating the taxonomic assignment of
each input read ## DOUBLE CHECK!!
*.krakenuniq.classified.txt KrakenUniq report containing statistics about classified
and unclassified reads.
*.krakenuniq.report.txt 
