modules/krakenuniq_preloadedkrakenuniq
Classifies metagenomic sequence data using unique k-mer counts
classifymetagenomicskmersfastqdb
Input
Name (Type)
Description
Pattern
Amount of maximum amount of RAM each chunk of database that should be loaded at any one time
*GBIf true, optional commands are added to save classified and unclassified reads
as fastq files
Output
Name (Type)
Description
Pattern
Reads classified as belonging to any of the taxa
on the KrakenUniq database.
*.fastq.gzReads not classified to any of the taxa
on the KrakenUniq database.
*.fastq.gzKrakenUniq output file indicating the taxonomic assignment of
each input read ## DOUBLE CHECK!!
KrakenUniq report containing stats about classified
and not classifed reads.
*.report.txt
