Description

KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test']

database (file)

Path to a Krona taxonomy .tab file normally downloaded and generated by
krona/ktUpdateTaxonomy. Custom taxonomy files can have any name, but
must end in .tab.

*tab

report (file)

A tab-delimited file with taxonomy IDs and (optionally) query IDs, magnitudes, and scores. Query IDs are taken from column 1, taxonomy IDs from column 2, and scores from column 3. Lines beginning with # will be ignored.

*.{tsv}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

html (file)

A html file containing an interactive krona plot.

*.{html}
included in
hgtseqtaxprofiler
author
Github user mjakobs
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Tools

krona

Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.

github.com/marbl/Krona/wiki/KronaTools http://manpages.ubuntu.com/manpages/impish/man1/ktImportTaxonomy.110.1186/1471-2105-12-385