Description

Creates a Krona chart from text files listing quantities and lineages.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’]

report (file)

Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with ’#’ will be ignored.

*.{txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

versions (file)

File containing software versions

versions.yml

html (file)

A html file containing an interactive krona plot.

*.{html}

Tools

krona
https://raw.githubusercontent.com/marbl/Krona/master/KronaTools/LICENSE.txt

Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.