Description

KronaTools Update Taxonomy downloads a taxonomy database

Input

No input parameters

Output

name:type
description
pattern

db{:bash}

taxonomy/taxonomy.tab{:bash}

:file

A TAB separated file that contains a taxonomy database.

*.{tab}

versions_krona{:bash}

${task.process}{:bash}

:string

The name of the process

krona{:bash}

:string

The name of the tool

ktImportTaxonomy | grep -Po '(?<=KronaTools )[0-9.]+'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

krona{:bash}

:string

The name of the tool

ktImportTaxonomy | grep -Po '(?<=KronaTools )[0-9.]+'{:bash}

:eval

The expression to obtain the version of the tool

Tools

krona

Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.