Description

Find suitable score parameters for sequence alignment

Input

Name (Type)
Description
Pattern

index (directory)

Directory containing the files of the LAST index

lastdb/

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastx (file)

FASTA/FASTQ file

*.{fasta,fastq}

param_file (file)

Trained parameter file

*.par

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

maf (file)

Gzipped MAF (Multiple Alignment Format) file

*.{maf.gz}