Description

Prepare sequences for subsequent alignment with lastal.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastx (file)

Sequence file in FASTA or FASTQ format. May be compressed with gzip.

*.{fasta,fasta.gz,fastq,fastq.gz}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

index (directory)

directory containing the files of the LAST index

lastdb/

Tools