Converts MAF alignments in another format.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
maf
Multiple Aligment Format (MAF) file, optionally compressed with gzip
*.{maf.gz,maf}
format
Output format (one of axt, blast, blasttab, chain, gff, html, psl, sam, or tab)
versions
File containing software versions
versions.yml
axt_gz
Gzipped pairwise alignment in Axt (Blastz) format (optional)
*.axt.gz
blast_gz
Gzipped pairwise alignment in blast format (optional)
*.blast.gz
blasttab_gz
Gzipped pairwise alignment in blasttab format (optional)
*.blasttab.gz
chain_gz
Gzipped pairwise alignment in UCSC chain format (optional)
*.chain.gz
gff_gz
Gzipped pairwise alignment in GFF format (optional)
*.gff.gz
html_gz
Gzipped pairwise alignment in HTML format (optional)
*.html.gz
psl_gz
Gzipped pairwise alignment in PSL (BLAT) format (optional)
*.psl.gz
SAM
Gzipped pairwise alignment in SAM format (optional)
*.sam.gz
tab
Gzipped pairwise alignment in TAB format (optional)
*.tab.gz
LAST finds & aligns related regions of sequences.
