Description

Reorder alignments in a MAF file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

maf (file)

Multiple Aligment Format (MAF) file, optionally compressed with gzip

*.{maf.gz,maf}

Output

Name (Type)
Description
Pattern

maf (file)

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

versions (file)

File containing software versions

versions.yml

Tools

last
GPL-3.0-or-later

LAST finds & aligns related regions of sequences.