Description

Post-alignment masking

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

maf

:file

Multiple Alignment Format (MAF) file, optionally compressed with gzip

*.{maf.gz,maf}

Output

name:type
description
pattern

maf

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.maf.gz

:file

Multiple Alignment Format (MAF) file, compressed with gzip

*.{maf.gz}

versions_last

${task.process}

:string

The name of the process

last

:string

The name of the tool

lastal --version | sed 's/lastal //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

last

:string

The name of the tool

lastal --version | sed 's/lastal //'

:eval

The expression to obtain the version of the tool