Description

Post-alignment masking

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

maf{:bash}

:file

Multiple Alignment Format (MAF) file, optionally compressed with gzip

*.{maf.gz,maf}

Output

name:type
description
pattern

maf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.maf.gz{:bash}

:file

Multiple Alignment Format (MAF) file, compressed with gzip

*.{maf.gz}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml