Description

Find split or spliced alignments in a MAF file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

maf:file

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

Output

name:type
description
pattern

maf

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.maf.gz:file

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

multiqc

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.tsv:file

Alignment summary for MultiQC

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

last
GPL v3-or-later

LAST finds & aligns related regions of sequences.