Description

Find split or spliced alignments in a MAF file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

maf (file)

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

maf (file)

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

multiqc (file)

Alignment summary for MultiQC

*.tsv
included in
pairgenomealign
maintainer
Github user charles-plessy
get in touch
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Tools

last
GPL v3-or-later

LAST finds & aligns related regions of sequences.

gitlab.com/mcfrith/last gitlab.com/mcfrith/last/-/blob/main/doc https://gitlab.com/mcfrith/last