Description

Find split or spliced alignments in a MAF file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

maf (file)

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

maf (file)

Multiple Aligment Format (MAF) file, compressed with gzip

*.{maf.gz}

Tools

last
GPL v3-or-later

LAST finds & aligns related regions of sequences.