modules/last_split

Find split or spliced alignments in a MAF file

LASTsplitsplicedalignmentMAF

https://github.com/nf-core/modules/[...]/modules/nf-core/last/split

Description

Find split or spliced alignments in a MAF file

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`maf:file`

Multiple Alignment Format (MAF) file, compressed with gzip

*.{maf.gz}

Output

name:type

description

pattern

`maf`

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*.maf.gz:file`

Multiple Alignment Format (MAF) file, compressed with gzip

*.{maf.gz}

`multiqc`

`meta:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*.tsv:file`

Alignment summary for MultiQC

*.tsv

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

last
GPL v3-or-later

LAST finds & aligns related regions of sequences.

gitlab.com/mcfrith/last gitlab.com/mcfrith/last/-/blob/main/doc https://gitlab.com/mcfrith/last

modules/last_split

Description

Input

`meta:map`

`maf:file`

Output

`maf`

`meta:map`

`*.maf.gz:file`

`multiqc`

`meta:map`

`*.tsv:file`

`versions`

`versions.yml:file`

Tools

last
GPL v3-or-later

included in

maintainer

get in touch

modules/last_split

Description

Input

meta:map

maf:file

Output

maf

meta:map

*.maf.gz:file

multiqc

meta:map

*.tsv:file

versions

versions.yml:file

Tools

last GPL v3-or-later

included in

maintainer

get in touch

`meta:map`

`maf:file`

`maf`

`meta:map`

`*.maf.gz:file`

`multiqc`

`meta:map`

`*.tsv:file`

`versions`

`versions.yml:file`

last
GPL v3-or-later