Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]
maf:file
Multiple Alignment Format (MAF) file, compressed with gzip
*.{maf.gz}
Output
name:type
description
pattern
maf
meta:map
Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]
*.maf.gz:file
Multiple Alignment Format (MAF) file, compressed with gzip
*.{maf.gz}
multiqc
meta:map
Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]
*.tsv:file
Summary reporting the total alignment length (including gaps) and the
percent identity computed with and without taking gaps in
consideration (because there is no standard definition of percent
identity).
