Description

Find suitable score parameters for sequence alignment

Input

Name (Type)
Description
Pattern

index (directory)

Directory containing the files of the LAST index

lastdb/

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fastx (file)

FASTA/FASTQ file

*.{fasta,fastq}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

param_file (file)

Trained parameter file

*.par
author
Github user aleksandrabliznina
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Tools

last
GPL v3-or-later

LAST finds & aligns related regions of sequences.

gitlab.com/mcfrith/last gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst https://gitlab.com/mcfrith/last