Description

Find suitable score parameters for sequence alignment

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

fastx (file)

FASTA/FASTQ file

*.{fasta,fastq}

index (directory)

Directory containing the files of the LAST index

lastdb/

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1', single_end:false ]

versions (file)

File containing software versions

versions.yml

param_file (file)

Trained parameter file

*.train