Description

Align sequences using learnMSA

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test']

fasta

:file

Input sequences in FASTA format.

*.{fa,fasta}

Output

name:type
description
pattern

alignment

meta

:map

Groovy Map containing sample information e.g. [ id:'test']

*.aln

:file

Alignment file, in FASTA format.

*.aln

versions_learnmsa

${task.process}

:string

The name of the process

learnmsa

:string

The name of the tool

learnMSA -h | sed -nE 's/.*version ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

learnmsa

:string

The name of the tool

learnMSA -h | sed -nE 's/.*version ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Tools

learnmsa
MIT

learnMSA: Learning and Aligning large Protein Families