Bayesian reconstruction of ancient DNA fragments
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
Unaligned BAM or one or two gzipped FASTQ file(s)
*.{bam,fq.gz,fastq.gz}
bam
${prefix}.bam
BAM file
*.bam
fq_pass
${prefix}.fq.gz
Trimmed and merged FASTQ
*.fq.gz
fq_fail
${prefix}.fail.fq.gz
Failed trimmed and merged FASTQs
*.fail.fq.gz
unmerged_r1_fq_pass
${prefix}_r1.fq.gz
Passed unmerged R1 FASTQs
*.r1.fq.gz
unmerged_r1_fq_fail
${prefix}_r1.fail.fq.gz
Failed unmerged R1 FASTQs
*.r1.fail.fq.gz
unmerged_r2_fq_pass
${prefix}_r2.fq.gz
Passed unmerged R2 FASTQs
*.r2.fq.gz
unmerged_r2_fq_fail
${prefix}_r2.fail.fq.gz
Failed unmerged R2 FASTQs
*.r2.fail.fq.gz
log
*.log
Log file of command
versions_last
${task.process}
:string
The name of the process
last
The name of the tool
1.2.15
The expression to obtain the version of the tool
versions
