Description

Typing of clinical and environmental isolates of Legionella pneumophila

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

seqs (file)

FASTA, GenBank or EMBL formatted files

*.{fasta,gbk,embl}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tsv (file)

Tab-delimited summary of the results

*.{tsv}

Tools

legsta
GPL v3

In silico Legionella pneumophila Sequence Based Typing