Description

Typing of clinical and environmental isolates of Legionella pneumophila

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

seqs:file

FASTA, GenBank or EMBL formatted files

*.{fasta,gbk,embl}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tsv:file

Tab-delimited summary of the results

*.{tsv}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

legsta
GPL v3

In silico Legionella pneumophila Sequence Based Typing