Description

Index chain files for lift over

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'reference' ]

fai:file

FAI (FASTA index) file of the target reference

*.{fai}

chain:file

Chain file to index.

*.{chain}

Output

name:type
description
pattern

clft

meta:map

Groovy Map containing sample information e.g. [ id:'reference' ]

*.clft:file

Clft file of indexed chain

*.{clft}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

leviosam2
MIT

Fast and accurate coordinate conversion between assemblies