Description

Predicts LTR retrotransposons using the parallel version of GenomeTools gt-ltrharvest utility included in the EDTA toolchain

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

fasta (file)

Input genome fasta

*.{fsa,fa,fasta}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'sample1' ]

versions (file)

File containing software versions

versions.yml

gff3 (file)

Predicted LTR candidates in gff3 format

*.gff3

scn (file)

Predicted LTR candidates in scn format

*.scn
maintainer
Github user GallVp
get in touch
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Tools

LTR_HARVEST_parallel
MIT

A Perl wrapper for LTR_harvest

github.com/oushujun/EDTA/tree/v2.2.0/bin/LTR_HARVEST_parallel