modules/ltrretriever_ltrretriever
Identifies LTR retrotransposons using LTR_retriever
genomicsannotationrepeatlong terminal repeatretrotransposon
Output
Name (Type)
Description
Pattern
Intact LTR-RTs with coordinate and structural information in summary table format
*.pass.list
Intact LTR-RTs with coordinate and structural information in gff3 format
*.pass.list.gff3
Whole-genome LTR-RT annotation by the non-redundant library in gff3 format
*.out.gff3