maximum-likelihood analysis of gene essentialities computation
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
count_table
:file
Count table file. Each line in the table should include sgRNA name (1st column), target gene (2nd column) and read counts in each sample.
*.{txt,tsv}
design_matrix
Design matrix describing the samples and conditions
gene_summary
*.gene_summary.txt
Gene summary file describing the fitness score and associated p-values.
*.{gene_summary}
sgrna_summary
*.sgrna_summary.txt
sgRNA summary file describing the sgRNA and associated gene
versions_mageck
${task.process}
:string
The name of the process
mageck
The name of the tool
mageck -v
:eval
The expression to obtain the version of the tool
versions
MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.
