modules/malt_build
MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
maltalignmentmetagenomicsancient DNAaDNApalaeogenomicsarchaeogenomicsmicrobiomedatabase
Description
MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
Input
name:type
description
pattern
An uncompressed MEGAN mapping file from https://software-ab.cs.uni-tuebingen.de/download/megan6/welcome.html (either mapping db, or acc2*..abin file)
*.{db,abin}
The type of map file provided to the pipeline. Must be a valid string corresponding to a single-dash parameter, for example ‘-a2tax’ or ‘-a2interpro2go’
mdb|a2t|s2t|a2ec|s2ec|t4ec|a2eggnog|s2eggnog|t4eggnog|a2gtdb|s2gtdb|t4gtdb|a2interpro2go|s2interpro2go|t4interprotogo|a2kegg|s2kegg|t4kegg|a2pgpt|s2pgpt|t4pgpt|a2seed|s2seed|t4seed