Description

MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.

Input

name:type
description
pattern

fastas:file

Directory of, or list of FASTA reference files for indexing

*/|*.fasta

gff:file

Directory of, or GFF3 files of input FASTA files

*/|*.gff|*.gff3

Output

name:type
description
pattern

index

malt_index/:directory

Directory containing MALT database index directory

malt_index/

versions

versions.yml:file

File containing software versions

versions.yml

log

malt-build.log:file

Log file from STD out of malt-build

malt-build.log