Description

Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening

Input

Name (Type)
Description
Pattern

rma6 (file)

RMA6 files from MALT

*.rma6

taxon_list (file)

List of target taxa to evaluate

*.txt

ncbi_dir (directory)

Directory containing NCBI taxonomy map and tre files

${ncbi_dir}/

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

results (directory)

Directory containing MaltExtract text results files

results/
author
Github user jfy133
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Tools

maltextract
GPL 3

Java tool to work with ancient metagenomics

github.com/rhuebler/hops 10.1186/s13059-019-1903-0