Description

Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

rma6 (file)

RMA6 files from MALT

*.rma6

taxon_list (file)

List of target taxa to evaluate

*.txt

ncbi_dir (directory)

Directory containing NCBI taxonomy map and tre files

${ncbi_dir}/

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

results (directory)

Directory containing MaltExtract text results files

results/

Tools

maltextract
GPL 3

Java tool to work with ancient metagenomics