Description

Tool for evaluation of MALT results for true positives of ancient metagenomic taxonomic screening

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

rma6{:bash}

:file

RMA6 files from MALT

*.rma6

taxon_list{:bash}

:file

List of target taxa to evaluate

*.txt

ncbi_dir{:bash}

:directory

Directory containing NCBI taxonomy map and tre files

${ncbi_dir}/

Output

name:type
description
pattern

results{:bash}

meta{:bash}

:directory

Directory containing MaltExtract text results files

results/

results{:bash}

:directory

Directory containing MaltExtract text results files

results/

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

maltextract
GPL 3

Java tool to work with ancient metagenomics

github.com/rhuebler/hops 10.1186/s13059-019-1903-0
maintainer
Github user jfy133
get in touch
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