Description

Create mapAD index for reference genome

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file

*.{fasta,fa,fna}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

index (directory)

mapAD genome index files

*.{tbw,tle,toc,tos,tpi,trt,tsa}
maintainer
Github user jch-13
get in touch
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Tools

mapad
MIT

An aDNA aware short-read mapper

github.com/mpieva/mapAD