Create mapAD index for reference genome
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA file
*.{fasta,fa,fna}
index
mapad/
:directory
mapAD genome index files
*.{tbw,tle,toc,tos,tpi,trt,tsa}
versions_mapad
${task.process}
:string
The name of the process
mapad
The name of the tool
mapad --version | sed 's/^mapAD //'
:eval
The expression to obtain the version of the tool
versions
An aDNA aware short-read mapper
