Create mapAD index for reference genome
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file
*.{fasta,fa,fna}
index{:bash}
mapad/{:bash}
:directory
mapAD genome index files
*.{tbw,tle,toc,tos,tpi,trt,tsa}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
An aDNA aware short-read mapper
