Description

Calculate Mash distances between reference and query sequences

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

query:file

FASTA, FASTQ or Mash sketch

*.{fasta,fasta.gz,fastq,fastq.gz,msh}

reference:file

FASTA, FASTQ or Mash sketch

*.{fasta,fasta.gz,fastq,fastq.gz,msh}

Output

name:type
description
pattern

dist

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt:file

The results from mash dist

*.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

Fast sequence distance estimator that uses MinHash