Description

Calculate Mash distances between reference and query seqeunces

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reference (file)

FASTA, FASTQ or Mash sketch

*.{fasta,fasta.gz,fastq,fastq.gz,msh}

query (file)

FASTA, FASTQ or Mash sketch

*.{fasta,fasta.gz,fastq,fastq.gz,msh}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

dist (file)

The results from mash dist

*.txt
maintainer
Github user rpetit3
get in touch
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Tools

mash
https://github.com/marbl/Mash/blob/master/LICENSE.txt

Fast sequence distance estimator that uses MinHash

github.com/marbl/Mash mash.readthedocs.io/en/latest/sketches https://github.com/marbl/Mash 10.1186/s13059-016-0997-x